STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dole_2001TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dde:Dde_2214 TRAP dicarboxylate transporter-DctM subunit. (433 aa)    
Predicted Functional Partners:
Dole_2002
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: swo:Swol_0330 tripartite ATP-independent periplasmic transporters, DctQ component, putative.
 
 
 0.975
Dole_2003
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dde:Dde_2216 extracellular solute-binding protein, family 7.
 
  
 0.940
Dole_3156
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: abo:ABO_0689 TRAP C4-dicarboxylate transporter.
 
 
 0.841
Dole_3157
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dps:DP0444 DctP (periplasmic C4-dicarboxylate binding protein).
 
  
 0.804
Dole_3074
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sfu:Sfum_2672 TRAP dicarboxylate transporter-DctP subunit.
 
  
 0.794
Dole_3078
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sfu:Sfum_2672 TRAP dicarboxylate transporter-DctP subunit.
 
  
 0.793
Dole_3168
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dps:DP0444 DctP (periplasmic C4-dicarboxylate binding protein).
 
  
 0.791
Dole_3076
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: abo:ABO_0689 TRAP C4-dicarboxylate transporter.
 
 
 0.771
Dole_3104
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sfu:Sfum_2672 TRAP dicarboxylate transporter-DctP subunit.
 
  
 0.728
Dole_2300
PFAM: protein of unknown function DUF112 transmembrane; KEGG: rsh:Rsph17029_3579 protein of unknown function DUF112, transmembrane.
  
     0.614
Your Current Organism:
Desulfococcus oleovorans
NCBI taxonomy Id: 96561
Other names: D. oleovorans Hxd3, Desulfobacteirum oleovorans Hxd3, Desulfococcus oleovorans Hxd3, delta proteobacterium Hxd3, sulfate-reducing bacterium Hxd3
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