Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dole_2002PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: swo:Swol_0330 tripartite ATP-independent periplasmic transporters, DctQ component, putative. (162 aa)    
Predicted Functional Partners:
Dole_2001
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dde:Dde_2214 TRAP dicarboxylate transporter-DctM subunit.
 
 
 0.962
Dole_2003
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dde:Dde_2216 extracellular solute-binding protein, family 7.
 
  
 0.952
Dole_3076
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: abo:ABO_0689 TRAP C4-dicarboxylate transporter.
     
  0.900
Dole_3156
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: abo:ABO_0689 TRAP C4-dicarboxylate transporter.
     
  0.900
Dole_3155
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: abo:ABO_0690 TRAP dicarboxylate transporter, putative.
 
 
 0.579
Dole_3075
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: abo:ABO_0690 TRAP dicarboxylate transporter, putative.
 
 
 0.577
Dole_3157
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dps:DP0444 DctP (periplasmic C4-dicarboxylate binding protein).
 
  
 0.499
Dole_0795
PFAM: CBS domain containing protein; KEGG: dde:Dde_0325 hypothetical protein.
  
     0.490
Dole_2338
PFAM: CBS domain containing protein; KEGG: dde:Dde_0325 hypothetical protein.
  
     0.447
Dole_0758
KEGG: mem:Memar_0762 hypothetical protein.
  
     0.428
Your Current Organism:
Desulfococcus oleovorans
NCBI taxonomy Id: 96561
Other names: D. oleovorans Hxd3, Desulfobacteirum oleovorans Hxd3, Desulfococcus oleovorans Hxd3, delta proteobacterium Hxd3, sulfate-reducing bacterium Hxd3
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