STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dole_2139KEGG: mxa:MXAN_5598 OmpA domain protein. (1011 aa)    
Predicted Functional Partners:
Dole_1460
Peptidyl-prolyl cis-trans isomerase cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 
 0.692
Dole_0240
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: hit:NTHI1638 predicted serine/threonine protein phosphatase family protein.
    
 0.636
Dole_2766
KEGG: pna:Pnap_3111 hypothetical protein.
  
    0.634
Dole_0026
KEGG: dps:DP1088 probable citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
    
 
 0.605
Dole_1063
KEGG: sfu:Sfum_2105 citrate (Si)-synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; Belongs to the citrate synthase family.
    
 
 0.605
Dole_3070
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: lsa:LSA0218 thioredoxin; Belongs to the thioredoxin family.
  
 
 0.593
Dole_0431
PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: gfo:GFO_1338 CotA-like multicopper oxidase.
   
 
 0.582
Dole_2140
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mta:Moth_0831 radical SAM.
       0.547
Dole_0363
SMART: Parallel beta-helix repeat; KEGG: rba:RB4375 probable extracellular nuclease.
  
     0.531
Dole_2878
TIGRFAM: redox-active disulfide protein 2; KEGG: sat:SYN_00338 glutaredoxin-like protein.
    
 0.529
Your Current Organism:
Desulfococcus oleovorans
NCBI taxonomy Id: 96561
Other names: D. oleovorans Hxd3, Desulfobacteirum oleovorans Hxd3, Desulfococcus oleovorans Hxd3, delta proteobacterium Hxd3, sulfate-reducing bacterium Hxd3
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