Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Dole_2139KEGG: mxa:MXAN_5598 OmpA domain protein. (1011 aa)    
Predicted Functional Partners:
Dole_2766
KEGG: pna:Pnap_3111 hypothetical protein.
  
    0.633
Dole_2140
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mta:Moth_0831 radical SAM.
       0.547
Dole_0363
SMART: Parallel beta-helix repeat; KEGG: rba:RB4375 probable extracellular nuclease.
  
     0.531
Dole_1941
Conserved hypothetical protein; KEGG: cch:Cag_0738 VCBS.
  
     0.519
Dole_3070
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: lsa:LSA0218 thioredoxin; Belongs to the thioredoxin family.
  
 
 0.503
Dole_1753
PFAM: FG-GAP repeat protein; KEGG: cch:Cag_0738 VCBS.
  
     0.487
Dole_1756
PFAM: FG-GAP repeat protein; KEGG: cch:Cag_0738 VCBS.
  
     0.477
Dole_1754
PFAM: FG-GAP repeat protein; KEGG: cch:Cag_0738 VCBS.
  
    0.475
Dole_1221
PFAM: FG-GAP repeat protein; KEGG: cch:Cag_0738 VCBS.
  
    0.470
Dole_1757
PFAM: FG-GAP repeat protein; KEGG: cch:Cag_0738 VCBS.
  
    0.465
Your Current Organism:
Desulfococcus oleovorans
NCBI taxonomy Id: 96561
Other names: D. oleovorans Hxd3, Desulfobacteirum oleovorans Hxd3, Desulfococcus oleovorans Hxd3, delta proteobacterium Hxd3, sulfate-reducing bacterium Hxd3
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.