Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Dole_2389 | Dole_2390 | Dole_2389 | Dole_2390 | Methyltransferase type 11; PFAM: Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: cvi:CV_3428 tellurite resistance protein. | Hypothetical protein; KEGG: pub:SAR11_0819 bacterioferritin comigratory protein. | 0.784 |
Dole_2389 | Dole_2391 | Dole_2389 | Dole_2391 | Methyltransferase type 11; PFAM: Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: cvi:CV_3428 tellurite resistance protein. | KEGG: dde:Dde_2481 hypothetical protein. | 0.784 |
Dole_2390 | Dole_2389 | Dole_2390 | Dole_2389 | Hypothetical protein; KEGG: pub:SAR11_0819 bacterioferritin comigratory protein. | Methyltransferase type 11; PFAM: Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: cvi:CV_3428 tellurite resistance protein. | 0.784 |
Dole_2390 | Dole_2391 | Dole_2390 | Dole_2391 | Hypothetical protein; KEGG: pub:SAR11_0819 bacterioferritin comigratory protein. | KEGG: dde:Dde_2481 hypothetical protein. | 0.784 |
Dole_2390 | msrB | Dole_2390 | Dole_1541 | Hypothetical protein; KEGG: pub:SAR11_0819 bacterioferritin comigratory protein. | methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.431 |
Dole_2391 | Dole_2389 | Dole_2391 | Dole_2389 | KEGG: dde:Dde_2481 hypothetical protein. | Methyltransferase type 11; PFAM: Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: cvi:CV_3428 tellurite resistance protein. | 0.784 |
Dole_2391 | Dole_2390 | Dole_2391 | Dole_2390 | KEGG: dde:Dde_2481 hypothetical protein. | Hypothetical protein; KEGG: pub:SAR11_0819 bacterioferritin comigratory protein. | 0.784 |
msrB | Dole_2390 | Dole_1541 | Dole_2390 | methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Hypothetical protein; KEGG: pub:SAR11_0819 bacterioferritin comigratory protein. | 0.431 |