STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dole_3203PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: slo:Shew_1858 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (395 aa)    
Predicted Functional Partners:
Dole_3202
PFAM: iron-containing alcohol dehydrogenase; KEGG: sat:SYN_00021 alcohol dehydrogenase, class IV.
 
   
 0.956
Dole_1810
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: dps:DPPB91 related to UDP-galactose-lipid carrier transferase.
 
  
 0.808
Dole_3201
Glutamine--fructose-6-phosphate transaminase (isomerizing); PFAM: sugar isomerase (SIS); KEGG: sat:SYN_02923 glucosamine--fructose-6-phosphate aminotransferase (isomerizing).
     
 0.717
Dole_3200
Hypothetical protein.
       0.696
Dole_2838
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: gme:Gmet_2352 oxidoreductase-like.
  
 0.623
Dole_1828
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: tth:TTC0285 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.557
Dole_3199
Hypothetical protein.
       0.533
Dole_0520
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: lbj:LBJ_0629 nucleoside-diphosphate-sugar epimerase.
  
  
 0.532
Dole_1010
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: syn:slr0836 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.532
Dole_1302
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sfu:Sfum_2184 polysaccharide biosynthesis protein CapD.
 
  
 0.510
Your Current Organism:
Desulfococcus oleovorans
NCBI taxonomy Id: 96561
Other names: D. oleovorans Hxd3, Desulfobacteirum oleovorans Hxd3, Desulfococcus oleovorans Hxd3, delta proteobacterium Hxd3, sulfate-reducing bacterium Hxd3
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