BRF1 protein (Mustela putorius) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BRF1

BRF1 RNA polymerase III transcription initiation factor subunit. (562 aa)

Predicted Functional Partners:

GTF3C3

0.989

M3YNB9_MUSPF

0.986

BDP1

0.986

TBP

0.984

POLR3A

0.956

POLR3B

0.953

TBPL2

0.951

M3XQ91_MUSPF

0.944

M3Y8H9_MUSPF

0.944

CRCP

0.938

Your Current Organism:

Mustela putorius

NCBI taxonomy Id: 9669
Other names: M. putorius furo, Mustela furo, Mustela putorius furo, black ferret, domestic ferret, ferret

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP1	BRF1	ENSMPUP00000014317	ENSMPUP00000008124	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	BRF1 RNA polymerase III transcription initiation factor subunit.	0.986
BDP1	CRCP	ENSMPUP00000014317	ENSMPUP00000016094	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	CGRP receptor component.	0.852
BDP1	GTF3C3	ENSMPUP00000014317	ENSMPUP00000007707	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 3.	0.857
BDP1	M3XQ91_MUSPF	ENSMPUP00000014317	ENSMPUP00000001241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.826
BDP1	M3Y8H9_MUSPF	ENSMPUP00000014317	ENSMPUP00000007636	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	Uncharacterized protein.	0.825
BDP1	POLR3A	ENSMPUP00000014317	ENSMPUP00000003760	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.922
BDP1	POLR3B	ENSMPUP00000014317	ENSMPUP00000012043	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.908
BDP1	TBP	ENSMPUP00000014317	ENSMPUP00000007155	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	TATA-box binding protein.	0.949
BDP1	TBPL2	ENSMPUP00000014317	ENSMPUP00000005760	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	TATA-box binding protein like 2.	0.898
BRF1	BDP1	ENSMPUP00000008124	ENSMPUP00000014317	BRF1 RNA polymerase III transcription initiation factor subunit.	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	0.986
BRF1	CRCP	ENSMPUP00000008124	ENSMPUP00000016094	BRF1 RNA polymerase III transcription initiation factor subunit.	CGRP receptor component.	0.938
BRF1	GTF3C3	ENSMPUP00000008124	ENSMPUP00000007707	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 3.	0.989
BRF1	M3XQ91_MUSPF	ENSMPUP00000008124	ENSMPUP00000001241	BRF1 RNA polymerase III transcription initiation factor subunit.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.944
BRF1	M3Y8H9_MUSPF	ENSMPUP00000008124	ENSMPUP00000007636	BRF1 RNA polymerase III transcription initiation factor subunit.	Uncharacterized protein.	0.944
BRF1	M3YNB9_MUSPF	ENSMPUP00000008124	ENSMPUP00000012826	BRF1 RNA polymerase III transcription initiation factor subunit.	Uncharacterized protein.	0.986
BRF1	POLR3A	ENSMPUP00000008124	ENSMPUP00000003760	BRF1 RNA polymerase III transcription initiation factor subunit.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.956
BRF1	POLR3B	ENSMPUP00000008124	ENSMPUP00000012043	BRF1 RNA polymerase III transcription initiation factor subunit.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.953
BRF1	TBP	ENSMPUP00000008124	ENSMPUP00000007155	BRF1 RNA polymerase III transcription initiation factor subunit.	TATA-box binding protein.	0.984
BRF1	TBPL2	ENSMPUP00000008124	ENSMPUP00000005760	BRF1 RNA polymerase III transcription initiation factor subunit.	TATA-box binding protein like 2.	0.951
CRCP	BDP1	ENSMPUP00000016094	ENSMPUP00000014317	CGRP receptor component.	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	0.852