TSR1 protein (Mustela putorius) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TSR1

TSR1 ribosome maturation factor. (655 aa)

Predicted Functional Partners:

BYSL

0.999

LTV1

0.998

NOB1

0.997

RRP12

0.990

DIMT1

0.989

RIOK2

0.986

POLR1B

0.973

NOP14

0.971

RIOK1

0.966

TFB2M

0.948

Your Current Organism:

Mustela putorius

NCBI taxonomy Id: 9669
Other names: M. putorius furo, Mustela furo, Mustela putorius furo, black ferret, domestic ferret, ferret

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BYSL	DIMT1	ENSMPUP00000013384	ENSMPUP00000007088	Bystin like.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.984
BYSL	LTV1	ENSMPUP00000013384	ENSMPUP00000017937	Bystin like.	LTV1 ribosome biogenesis factor.	0.998
BYSL	NOB1	ENSMPUP00000013384	ENSMPUP00000007427	Bystin like.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.999
BYSL	NOP14	ENSMPUP00000013384	ENSMPUP00000010812	Bystin like.	NOP14 nucleolar protein.	0.994
BYSL	POLR1B	ENSMPUP00000013384	ENSMPUP00000009568	Bystin like.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.850
BYSL	RIOK1	ENSMPUP00000013384	ENSMPUP00000000564	Bystin like.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.964
BYSL	RIOK2	ENSMPUP00000013384	ENSMPUP00000004416	Bystin like.	RIO kinase 2.	0.987
BYSL	RRP12	ENSMPUP00000013384	ENSMPUP00000016940	Bystin like.	Ribosomal RNA processing 12 homolog.	0.994
BYSL	TFB2M	ENSMPUP00000013384	ENSMPUP00000015702	Bystin like.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.947
BYSL	TSR1	ENSMPUP00000013384	ENSMPUP00000012901	Bystin like.	TSR1 ribosome maturation factor.	0.999
DIMT1	BYSL	ENSMPUP00000007088	ENSMPUP00000013384	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Bystin like.	0.984
DIMT1	LTV1	ENSMPUP00000007088	ENSMPUP00000017937	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	LTV1 ribosome biogenesis factor.	0.968
DIMT1	NOB1	ENSMPUP00000007088	ENSMPUP00000007427	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.974
DIMT1	NOP14	ENSMPUP00000007088	ENSMPUP00000010812	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	NOP14 nucleolar protein.	0.811
DIMT1	POLR1B	ENSMPUP00000007088	ENSMPUP00000009568	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.672
DIMT1	RIOK2	ENSMPUP00000007088	ENSMPUP00000004416	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	RIO kinase 2.	0.901
DIMT1	RRP12	ENSMPUP00000007088	ENSMPUP00000016940	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Ribosomal RNA processing 12 homolog.	0.929
DIMT1	TSR1	ENSMPUP00000007088	ENSMPUP00000012901	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	TSR1 ribosome maturation factor.	0.989
LTV1	BYSL	ENSMPUP00000017937	ENSMPUP00000013384	LTV1 ribosome biogenesis factor.	Bystin like.	0.998
LTV1	DIMT1	ENSMPUP00000017937	ENSMPUP00000007088	LTV1 ribosome biogenesis factor.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.968