STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tchl_0179Copper-translocating P-type ATPase. (782 aa)    
Predicted Functional Partners:
Tchl_0177
Hypothetical protein.
 
     0.751
Tchl_3208
Copper chaperone CopZ.
  
 
 0.705
Tchl_0178
Cytochrome c.
     
 0.701
Tchl_0176
Hypothetical protein.
       0.693
Tchl_0181
Putative protein-S-isoprenylcysteine methyltransferase.
    
 0.662
Tchl_0174
Co efflux system membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.571
Tchl_0175
Copper cation efflux system protein CusA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
    
 0.550
Tchl_0180
Hypothetical protein.
       0.542
Tchl_0232
Putative cytochrome P450 hydroxylase.
  
  
 0.516
Tchl_2887
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.504
Your Current Organism:
Thauera chlorobenzoica
NCBI taxonomy Id: 96773
Other names: ATCC 700723, CIP 107679, DSM 18012, KCTC 12933, T. chlorobenzoica, Thauera aromatica genomovar chlorobenzoica, Thauera chlorobenzoica Song et al. 2001, strain 3CB-1
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