STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tchl_0198Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (328 aa)    
Predicted Functional Partners:
Tchl_0197
RaiA family protein.
 
   
 0.771
Tchl_0196
Hypothetical protein.
       0.540
Tchl_0759
Glutamate synthase [NADPH] large chain.
     
 0.491
Tchl_1482
Transcriptional regulator DbdR; Belongs to the LysR transcriptional regulatory family.
  
     0.449
Tchl_1789
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.448
Tchl_1056
Transcriptional regulator ligR, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.440
Tchl_0195
Hypothetical protein.
  
    0.414
Tchl_1461
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.401
Your Current Organism:
Thauera chlorobenzoica
NCBI taxonomy Id: 96773
Other names: ATCC 700723, CIP 107679, DSM 18012, KCTC 12933, T. chlorobenzoica, Thauera aromatica genomovar chlorobenzoica, Thauera chlorobenzoica Song et al. 2001, strain 3CB-1
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