STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tchl_0300Restriction endonuclease. (320 aa)    
Predicted Functional Partners:
Tchl_0299
Hypothetical protein.
     
 0.782
Tchl_0301
Hypothetical protein.
       0.587
Tchl_0103
phenylacetyl-CoA:acceptor oxidoreductase small subunit PadC.
   
    0.519
Tchl_0488
Formate dehydrogenase, iron-sulfur subunit FdhB.
   
    0.519
Tchl_1464
3,5-dihydroxybenzoate hydroxylase small subunit.
   
    0.519
Tchl_1914
Ferredoxin.
   
    0.519
Tchl_2132
NADH-dependent phenylglyoxylate dehydrogenase beta subunit PadI.
   
    0.519
Tchl_2138
phenylacetyl-CoA:acceptor oxidoreductase-like protein, small subunit PadC.
   
    0.519
Tchl_0302
Hypothetical protein.
       0.430
Tchl_0005
Type I restriction-modification system, DNA-methyltransferase subunit M.
  
  
 0.404
Your Current Organism:
Thauera chlorobenzoica
NCBI taxonomy Id: 96773
Other names: ATCC 700723, CIP 107679, DSM 18012, KCTC 12933, T. chlorobenzoica, Thauera aromatica genomovar chlorobenzoica, Thauera chlorobenzoica Song et al. 2001, strain 3CB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.