STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tchl_1099Hemerythrin HHE cation binding domain protein. (202 aa)    
Predicted Functional Partners:
Tchl_3217
UspA.
    
 0.833
Tchl_1590
Universal stress protein.
    
 0.801
aroK-2
Regulatory protein of benzoate catabolism; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
  
    0.735
Tchl_2158
Branched-chain amino acid transport ATP-binding protein LivF.
 
      0.588
Tchl_1377
Branched-chain amino acid ABC transporter ATP-binding protein.
 
      0.573
Tchl_1416
Universal stress family protein.
    
 0.555
Tchl_1490
Beta-lactamase-like protein.
 
      0.533
Tchl_2994
Branched-chain amino acid transport ATP-binding protein LivF.
 
      0.492
Tchl_3402
Benzoate transport, ATP binding protein.
 
      0.478
Tchl_1112
Benzoate transporter, ATP binding protein.
 
      0.475
Your Current Organism:
Thauera chlorobenzoica
NCBI taxonomy Id: 96773
Other names: ATCC 700723, CIP 107679, DSM 18012, KCTC 12933, T. chlorobenzoica, Thauera aromatica genomovar chlorobenzoica, Thauera chlorobenzoica Song et al. 2001, strain 3CB-1
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