STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tchl_1330Sigma factor RpoE-like; Belongs to the sigma-70 factor family. ECF subfamily. (196 aa)    
Predicted Functional Partners:
Tchl_1331
Iron siderophore sensor protein.
 
 
 0.962
Tchl_1639
Fe2+-dicitrate sensor, membrane component.
 
 
 0.836
Tchl_1096
Fe2+-dicitrate sensor, membrane component.
 
 
 0.834
Tchl_1149
Iron transport regulator FecR.
 
 
 0.833
Tchl_1332
Ferrichrome-iron receptor.
 
  
 0.812
Tchl_2396
Anti sigma-E protein, RseA.
  
 
 0.777
Tchl_1097
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.774
Tchl_1640
ECF Sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.774
Tchl_1333
Putative iron-regulated membrane protein.
 
     0.763
rpoC
DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.586
Your Current Organism:
Thauera chlorobenzoica
NCBI taxonomy Id: 96773
Other names: ATCC 700723, CIP 107679, DSM 18012, KCTC 12933, T. chlorobenzoica, Thauera aromatica genomovar chlorobenzoica, Thauera chlorobenzoica Song et al. 2001, strain 3CB-1
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