STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tchl_1541Sodium-solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (486 aa)    
Predicted Functional Partners:
Tchl_1344
Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
  
 0.979
Tchl_2473
Diguanylate cyclase.
  
 
 0.646
Tchl_1925
Diguanylate cyclase.
  
 
 0.622
Tchl_1369
Hypothetical protein.
  
     0.534
Tchl_1542
Ornithine aminotransferase/arginase; Belongs to the arginase family.
     
 0.502
Tchl_1924
ABC-type tungstate transport system, ATPase; Belongs to the ABC transporter superfamily.
  
  
 0.502
Tchl_1601
Sodium/alanine symporter.
  
  
 0.493
Tchl_2954
Sensory box histidine kinase/response regulator.
  
  
 0.492
Tchl_2228
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
  
  
 0.490
Tchl_1507
Diguanylate cyclase/phosphodiesterase.
  
  
 0.488
Your Current Organism:
Thauera chlorobenzoica
NCBI taxonomy Id: 96773
Other names: ATCC 700723, CIP 107679, DSM 18012, KCTC 12933, T. chlorobenzoica, Thauera aromatica genomovar chlorobenzoica, Thauera chlorobenzoica Song et al. 2001, strain 3CB-1
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