STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tchl_1814Histidine kinase. (540 aa)    
Predicted Functional Partners:
Tchl_1815
Response regulator.
 
 0.994
Tchl_1531
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
 0.912
Tchl_1813
Hypothetical protein.
       0.800
Tchl_1600
Histidine kinase.
 
 
0.761
Tchl_0078
LysM domain protein.
  
     0.753
Tchl_0754
Type IV pilus biogenesis protein PilP.
  
     0.745
Tchl_0753
Type IV pilus biogenesis protein PilO.
  
     0.741
Tchl_0951
Type IV pilus biogenesis protein PilF.
 
     0.741
Tchl_0752
Type IV pilus biogenesis protein PilN.
  
     0.740
Tchl_0751
Type IV pilus biogenesis protein PilM.
  
     0.734
Your Current Organism:
Thauera chlorobenzoica
NCBI taxonomy Id: 96773
Other names: ATCC 700723, CIP 107679, DSM 18012, KCTC 12933, T. chlorobenzoica, Thauera aromatica genomovar chlorobenzoica, Thauera chlorobenzoica Song et al. 2001, strain 3CB-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.