STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tchl_2297Diguanylate cyclase. (587 aa)    
Predicted Functional Partners:
Tchl_2227
REC/EAL domain-containing signaling protein.
 
 0.992
Tchl_1925
Diguanylate cyclase.
 
 0.977
Tchl_1037
Response regulator.
 
 
 0.969
Tchl_2472
Response regulator.
 
 
 0.969
Tchl_2954
Sensory box histidine kinase/response regulator.
 
0.966
Tchl_2473
Diguanylate cyclase.
 
 0.965
Tchl_2228
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 0.962
Tchl_1507
Diguanylate cyclase/phosphodiesterase.
 
 
0.957
Tchl_1927
Diguanylate cyclase.
 
 
0.953
Tchl_2867
Response regulator.
 
 
 0.951
Your Current Organism:
Thauera chlorobenzoica
NCBI taxonomy Id: 96773
Other names: ATCC 700723, CIP 107679, DSM 18012, KCTC 12933, T. chlorobenzoica, Thauera aromatica genomovar chlorobenzoica, Thauera chlorobenzoica Song et al. 2001, strain 3CB-1
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