STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tchl_2530Putative type IV fimbrial biogenesis protein. (189 aa)    
Predicted Functional Partners:
Tchl_2529
Type IV fimbrial biogenesis protein PilW.
 
   
 0.933
Tchl_2526
Type IV minor pilin ComP.
 
  
 0.832
Tchl_2527
Hypothetical protein.
  
  
 0.802
Tchl_2528
Type IV fimbrial biogenesis protein PilX.
  
  
 0.769
Tchl_0752
Type IV pilus biogenesis protein PilN.
 
  
 0.690
Tchl_0753
Type IV pilus biogenesis protein PilO.
 
  
 0.672
Tchl_0754
Type IV pilus biogenesis protein PilP.
  
  
 0.664
Tchl_0751
Type IV pilus biogenesis protein PilM.
 
   
 0.609
Tchl_2346
Type IV pilus biogenesis protein PilZ.
  
   
 0.552
Tchl_0078
LysM domain protein.
  
   
 0.500
Your Current Organism:
Thauera chlorobenzoica
NCBI taxonomy Id: 96773
Other names: ATCC 700723, CIP 107679, DSM 18012, KCTC 12933, T. chlorobenzoica, Thauera aromatica genomovar chlorobenzoica, Thauera chlorobenzoica Song et al. 2001, strain 3CB-1
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