STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tchl_2679Response regulator. (253 aa)    
Predicted Functional Partners:
Tchl_2678
Histidine kinase.
 0.996
Tchl_2228
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 
 0.944
Tchl_2473
Diguanylate cyclase.
 
 
0.936
Tchl_1426
Diguanylate cyclase.
 
 
 0.930
Tchl_2226
HPt domain signaling protein.
  
 
 0.910
Tchl_1925
Diguanylate cyclase.
 
 0.873
Tchl_3254
Histidine kinase.
 
 0.842
Tchl_2954
Sensory box histidine kinase/response regulator.
 
 
0.838
Tchl_3439
Histidine kinase QseC.
 
 0.801
Tchl_2698
Sensory histidine kinase QseC.
 
 0.793
Your Current Organism:
Thauera chlorobenzoica
NCBI taxonomy Id: 96773
Other names: ATCC 700723, CIP 107679, DSM 18012, KCTC 12933, T. chlorobenzoica, Thauera aromatica genomovar chlorobenzoica, Thauera chlorobenzoica Song et al. 2001, strain 3CB-1
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