STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tchl_2860Dipeptide transport ATP-binding protein DppF (TC3.A.1.5.2); Belongs to the ABC transporter superfamily. (681 aa)    
Predicted Functional Partners:
Tchl_2554
ABC transport system permease protein.
 
 0.999
Tchl_2553
ABC transport system permease protein.
 
 0.993
Tchl_3359
Hypothetical protein.
  
 
 0.924
Tchl_2552
ABC transport system permease protein.
 
  
 0.866
Tchl_2551
ABC transporter, periplasmic substrate-binding component.
 
  
 0.862
Tchl_2861
FKBP-type peptidyl-prolyl cis-trans isomerase SlyD.
     
 0.447
Tchl_2862
Alkyl hydroperoxide reductase subunit C-like protein.
       0.446
Tchl_0705
Potassium-efflux protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
      
 0.416
Your Current Organism:
Thauera chlorobenzoica
NCBI taxonomy Id: 96773
Other names: ATCC 700723, CIP 107679, DSM 18012, KCTC 12933, T. chlorobenzoica, Thauera aromatica genomovar chlorobenzoica, Thauera chlorobenzoica Song et al. 2001, strain 3CB-1
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