STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tchl_3340High-affinity iron permease. (272 aa)    
Predicted Functional Partners:
Tchl_3343
High-affinity Fe2+ transport protein.
 
  
 0.982
Tchl_3339
Membrane-bound ferredoxin.
 
    0.945
Tchl_3341
Cupredoxin domain protein.
 
   
 0.916
Tchl_2619
Ferric iron ABC transporter, iron-binding protein.
   
  
 0.806
Tchl_1244
Putative corrinoid ABC transporter ATP-binding protein.
   
  
 0.683
Tchl_0466
Periplasmic B12-binding protein BtuF.
   
  
 0.647
Tchl_3342
ObrB family porin.
 
     0.592
macB
Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
  
 0.581
Tchl_1638
Ferrichrome-iron receptor.
   
  
 0.553
Tchl_1332
Ferrichrome-iron receptor.
   
  
 0.494
Your Current Organism:
Thauera chlorobenzoica
NCBI taxonomy Id: 96773
Other names: ATCC 700723, CIP 107679, DSM 18012, KCTC 12933, T. chlorobenzoica, Thauera aromatica genomovar chlorobenzoica, Thauera chlorobenzoica Song et al. 2001, strain 3CB-1
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