STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tchl_3341Cupredoxin domain protein. (112 aa)    
Predicted Functional Partners:
Tchl_3340
High-affinity iron permease.
 
   
 0.916
Tchl_3343
High-affinity Fe2+ transport protein.
 
     0.913
Tchl_3339
Membrane-bound ferredoxin.
 
    0.873
Tchl_3342
ObrB family porin.
 
     0.709
Tchl_0170
Multicopper oxidase.
   
 
 0.426
Tchl_3101
Multicopper oxidase.
   
 
 0.426
Your Current Organism:
Thauera chlorobenzoica
NCBI taxonomy Id: 96773
Other names: ATCC 700723, CIP 107679, DSM 18012, KCTC 12933, T. chlorobenzoica, Thauera aromatica genomovar chlorobenzoica, Thauera chlorobenzoica Song et al. 2001, strain 3CB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.