DDX27 protein (Felis catus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DDX27

DEAD-box helicase 27; Belongs to the DEAD box helicase family. (764 aa)

Predicted Functional Partners:

PES1

0.973

PRRT4

0.966

NIFK

0.961

NOC2L

0.940

BOP1

0.939

FTSJ3

0.938

UTP14A

0.934

UTP18

0.920

RBM34

0.918

ENSFCAP00000052252

0.918

Your Current Organism:

Felis catus

NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOP1	DDX27	ENSFCAP00000037118	ENSFCAP00000001344	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	0.939
BOP1	ENSFCAP00000052252	ENSFCAP00000037118	ENSFCAP00000052252	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.981
BOP1	FTSJ3	ENSFCAP00000037118	ENSFCAP00000012967	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.995
BOP1	NIFK	ENSFCAP00000037118	ENSFCAP00000010022	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar protein interacting with the FHA domain of MKI67.	0.983
BOP1	NOC2L	ENSFCAP00000037118	ENSFCAP00000003096	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	NOC2 like nucleolar associated transcriptional repressor.	0.998
BOP1	PES1	ENSFCAP00000037118	ENSFCAP00000030001	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.999
BOP1	PRRT4	ENSFCAP00000037118	ENSFCAP00000051817	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Proline rich transmembrane protein 4.	0.906
BOP1	RBM34	ENSFCAP00000037118	ENSFCAP00000001715	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	RNA binding motif protein 34.	0.886
BOP1	UTP14A	ENSFCAP00000037118	ENSFCAP00000043892	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.853
BOP1	UTP18	ENSFCAP00000037118	ENSFCAP00000052296	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	UTP18 small subunit processome component.	0.985
DDX27	BOP1	ENSFCAP00000001344	ENSFCAP00000037118	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.939
DDX27	ENSFCAP00000052252	ENSFCAP00000001344	ENSFCAP00000052252	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.918
DDX27	FTSJ3	ENSFCAP00000001344	ENSFCAP00000012967	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.938
DDX27	NIFK	ENSFCAP00000001344	ENSFCAP00000010022	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	Nucleolar protein interacting with the FHA domain of MKI67.	0.961
DDX27	NOC2L	ENSFCAP00000001344	ENSFCAP00000003096	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	NOC2 like nucleolar associated transcriptional repressor.	0.940
DDX27	PES1	ENSFCAP00000001344	ENSFCAP00000030001	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.973
DDX27	PRRT4	ENSFCAP00000001344	ENSFCAP00000051817	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	Proline rich transmembrane protein 4.	0.966
DDX27	RBM34	ENSFCAP00000001344	ENSFCAP00000001715	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	RNA binding motif protein 34.	0.918
DDX27	UTP14A	ENSFCAP00000001344	ENSFCAP00000043892	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.934
DDX27	UTP18	ENSFCAP00000001344	ENSFCAP00000052296	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	UTP18 small subunit processome component.	0.920