STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS53VPS53 subunit of GARP complex. (832 aa)    
Predicted Functional Partners:
VPS51
VPS51 subunit of GARP complex.
   
 0.998
VPS54
VPS54 subunit of GARP complex.
   
 0.996
LOC101086807
Uncharacterized protein.
   
 0.976
EIPR1
EARP complex and GARP complex interacting protein 1.
    
 
 0.976
VPS52
Uncharacterized protein.
   
 0.976
VPS50
VPS50 subunit of EARP/GARPII complex.
   
 
 0.970
RAB36
RAB36, member RAS oncogene family.
    
 0.904
COG4
Component of oligomeric golgi complex 4.
   
 
 0.893
AFAP1L1
Actin filament associated protein 1 like 1.
      
 0.879
COG1
Component of oligomeric golgi complex 1.
     
 0.865
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.