MRM3 protein (Felis catus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

MRM3

Mitochondrial rRNA methyltransferase 3. (483 aa)

Predicted Functional Partners:

DDX28

0.924

MALSU1

0.870

MRPS30

0.851

MRPL39

0.850

MRPL47

0.842

MRPL28

0.828

GTPBP10

0.802

MRPL13

0.781

MRPL24

0.778

MRPL11

0.776

Your Current Organism:

Felis catus

NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX28	GTPBP10	ENSFCAP00000024222	ENSFCAP00000015427	DEAD-box helicase 28.	GTP binding protein 10.	0.873
DDX28	MALSU1	ENSFCAP00000024222	ENSFCAP00000023660	DEAD-box helicase 28.	Mitochondrial assembly of ribosomal large subunit 1.	0.838
DDX28	MRM3	ENSFCAP00000024222	ENSFCAP00000001552	DEAD-box helicase 28.	Mitochondrial rRNA methyltransferase 3.	0.924
DDX28	MRPL11	ENSFCAP00000024222	ENSFCAP00000022420	DEAD-box helicase 28.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.722
DDX28	MRPL13	ENSFCAP00000024222	ENSFCAP00000052997	DEAD-box helicase 28.	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.797
DDX28	MRPL24	ENSFCAP00000024222	ENSFCAP00000008813	DEAD-box helicase 28.	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.670
DDX28	MRPL28	ENSFCAP00000024222	ENSFCAP00000049547	DEAD-box helicase 28.	Mitochondrial ribosomal protein L28.	0.642
DDX28	MRPL39	ENSFCAP00000024222	ENSFCAP00000018050	DEAD-box helicase 28.	Mitochondrial ribosomal protein L39.	0.594
DDX28	MRPL47	ENSFCAP00000024222	ENSFCAP00000038494	DEAD-box helicase 28.	Mitochondrial ribosomal protein L47.	0.716
DDX28	MRPS30	ENSFCAP00000024222	ENSFCAP00000017820	DEAD-box helicase 28.	Mitochondrial ribosomal protein S30.	0.759
GTPBP10	DDX28	ENSFCAP00000015427	ENSFCAP00000024222	GTP binding protein 10.	DEAD-box helicase 28.	0.873
GTPBP10	MALSU1	ENSFCAP00000015427	ENSFCAP00000023660	GTP binding protein 10.	Mitochondrial assembly of ribosomal large subunit 1.	0.865
GTPBP10	MRM3	ENSFCAP00000015427	ENSFCAP00000001552	GTP binding protein 10.	Mitochondrial rRNA methyltransferase 3.	0.802
GTPBP10	MRPL11	ENSFCAP00000015427	ENSFCAP00000022420	GTP binding protein 10.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.817
GTPBP10	MRPL13	ENSFCAP00000015427	ENSFCAP00000052997	GTP binding protein 10.	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.694
GTPBP10	MRPL24	ENSFCAP00000015427	ENSFCAP00000008813	GTP binding protein 10.	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.687
GTPBP10	MRPL28	ENSFCAP00000015427	ENSFCAP00000049547	GTP binding protein 10.	Mitochondrial ribosomal protein L28.	0.658
GTPBP10	MRPL39	ENSFCAP00000015427	ENSFCAP00000018050	GTP binding protein 10.	Mitochondrial ribosomal protein L39.	0.657
GTPBP10	MRPL47	ENSFCAP00000015427	ENSFCAP00000038494	GTP binding protein 10.	Mitochondrial ribosomal protein L47.	0.642
GTPBP10	MRPS30	ENSFCAP00000015427	ENSFCAP00000017820	GTP binding protein 10.	Mitochondrial ribosomal protein S30.	0.747