RBM34 protein (Felis catus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RBM34

RNA binding motif protein 34. (436 aa)

Predicted Functional Partners:

FTSJ3

0.979

DDX27

0.974

PRRT4

0.971

ENSFCAP00000052252

0.962

BRIX1

0.961

EBNA1BP2

0.957

WDR74

0.957

DDX54

0.956

DDX24

0.955

DDX18

0.953

Your Current Organism:

Felis catus

NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRIX1	DDX18	ENSFCAP00000046438	ENSFCAP00000000699	Biogenesis of ribosomes BRX1.	RNA helicase.	0.964
BRIX1	DDX24	ENSFCAP00000046438	ENSFCAP00000009495	Biogenesis of ribosomes BRX1.	DEAD-box helicase 24.	0.862
BRIX1	DDX27	ENSFCAP00000046438	ENSFCAP00000001344	Biogenesis of ribosomes BRX1.	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	0.871
BRIX1	DDX54	ENSFCAP00000046438	ENSFCAP00000016527	Biogenesis of ribosomes BRX1.	ATP-dependent RNA helicase DDX54; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily.	0.878
BRIX1	EBNA1BP2	ENSFCAP00000046438	ENSFCAP00000022627	Biogenesis of ribosomes BRX1.	EBNA1 binding protein 2.	0.995
BRIX1	ENSFCAP00000052252	ENSFCAP00000046438	ENSFCAP00000052252	Biogenesis of ribosomes BRX1.	Uncharacterized protein.	0.984
BRIX1	FTSJ3	ENSFCAP00000046438	ENSFCAP00000012967	Biogenesis of ribosomes BRX1.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.950
BRIX1	PRRT4	ENSFCAP00000046438	ENSFCAP00000051817	Biogenesis of ribosomes BRX1.	Proline rich transmembrane protein 4.	0.965
BRIX1	RBM34	ENSFCAP00000046438	ENSFCAP00000001715	Biogenesis of ribosomes BRX1.	RNA binding motif protein 34.	0.961
BRIX1	WDR74	ENSFCAP00000046438	ENSFCAP00000035142	Biogenesis of ribosomes BRX1.	WD repeat domain 74.	0.960
DDX18	BRIX1	ENSFCAP00000000699	ENSFCAP00000046438	RNA helicase.	Biogenesis of ribosomes BRX1.	0.964
DDX18	DDX24	ENSFCAP00000000699	ENSFCAP00000009495	RNA helicase.	DEAD-box helicase 24.	0.947
DDX18	DDX27	ENSFCAP00000000699	ENSFCAP00000001344	RNA helicase.	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	0.972
DDX18	DDX54	ENSFCAP00000000699	ENSFCAP00000016527	RNA helicase.	ATP-dependent RNA helicase DDX54; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily.	0.943
DDX18	EBNA1BP2	ENSFCAP00000000699	ENSFCAP00000022627	RNA helicase.	EBNA1 binding protein 2.	0.968
DDX18	ENSFCAP00000052252	ENSFCAP00000000699	ENSFCAP00000052252	RNA helicase.	Uncharacterized protein.	0.975
DDX18	FTSJ3	ENSFCAP00000000699	ENSFCAP00000012967	RNA helicase.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.974
DDX18	PRRT4	ENSFCAP00000000699	ENSFCAP00000051817	RNA helicase.	Proline rich transmembrane protein 4.	0.930
DDX18	RBM34	ENSFCAP00000000699	ENSFCAP00000001715	RNA helicase.	RNA binding motif protein 34.	0.953
DDX18	WDR74	ENSFCAP00000000699	ENSFCAP00000035142	RNA helicase.	WD repeat domain 74.	0.964