STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDR45BWD repeat domain 45B. (344 aa)    
Predicted Functional Partners:
ATG2B
Autophagy related 2B.
    
 0.976
ATG2A
Autophagy related 2A.
    
 0.973
ATG16L1
Autophagy related 16 like 1.
     
 0.917
ATG16L2
Autophagy related 16 like 2.
     
 0.917
WIPI1
WD repeat domain, phosphoinositide interacting 1.
   
 0.909
WIPI2
WD repeat domain, phosphoinositide interacting 2.
   
 0.886
PRAF2
WD repeat domain 45.
     
  0.800
RAB40B
RAB40B, member RAS oncogene family.
 
    
 0.740
CE2H16orf70
Chromosome E2 C16orf70 homolog.
   
  
 0.699
RAB40C
RAB40C, member RAS oncogene family.
 
    
 0.666
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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