STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB3DRAB3D, member RAS oncogene family. (219 aa)    
Predicted Functional Partners:
RIMS2
Regulating synaptic membrane exocytosis 2.
    
 0.879
RABGGTA
Rab geranylgeranyltransferase subunit alpha.
    
 0.805
RAB3IP
Sec2p domain-containing protein.
    
 0.712
SYT1
Synaptotagmin 1.
   
 0.655
SYT2
Synaptotagmin 2.
   
 0.655
STXBP3
Syntaxin binding protein 3; Belongs to the STXBP/unc-18/SEC1 family.
   
 
 0.641
VAMP8
Vesicle associated membrane protein 8.
   
 
 0.636
SNAP25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.628
STX2
Syntaxin 2; Belongs to the syntaxin family.
    
 0.615
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
   
 0.603
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.