RAPSN protein (Felis catus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RAPSN

Receptor associated protein of the synapse. (412 aa)

Predicted Functional Partners:

MUSK

0.693

GMPPB

0.689

MYO9A

0.687

CHRNE

0.682

CHRND

0.667

DOK7

0.663

LOC101090552

0.650

ALG14

0.602

CHRNG

0.600

CHRNA1

0.585

Your Current Organism:

Felis catus

NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALG14	CHRNA1	ENSFCAP00000052904	ENSFCAP00000054888	ALG14 UDP-N-acetylglucosaminyltransferase subunit.	Acetylcholine receptor subunit alpha; After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.	0.455
ALG14	CHRND	ENSFCAP00000052904	ENSFCAP00000005273	ALG14 UDP-N-acetylglucosaminyltransferase subunit.	Cholinergic receptor nicotinic delta subunit.	0.715
ALG14	CHRNE	ENSFCAP00000052904	ENSFCAP00000028802	ALG14 UDP-N-acetylglucosaminyltransferase subunit.	Cholinergic receptor nicotinic epsilon subunit.	0.599
ALG14	CHRNG	ENSFCAP00000052904	ENSFCAP00000038027	ALG14 UDP-N-acetylglucosaminyltransferase subunit.	Cholinergic receptor nicotinic gamma subunit.	0.447
ALG14	DOK7	ENSFCAP00000052904	ENSFCAP00000053252	ALG14 UDP-N-acetylglucosaminyltransferase subunit.	Docking protein 7.	0.508
ALG14	GMPPB	ENSFCAP00000052904	ENSFCAP00000009914	ALG14 UDP-N-acetylglucosaminyltransferase subunit.	GDP-mannose pyrophosphorylase B.	0.619
ALG14	LOC101090552	ENSFCAP00000052904	ENSFCAP00000061119	ALG14 UDP-N-acetylglucosaminyltransferase subunit.	Uncharacterized protein.	0.653
ALG14	MYO9A	ENSFCAP00000052904	ENSFCAP00000024834	ALG14 UDP-N-acetylglucosaminyltransferase subunit.	Myosin IXA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.688
ALG14	RAPSN	ENSFCAP00000052904	ENSFCAP00000002333	ALG14 UDP-N-acetylglucosaminyltransferase subunit.	Receptor associated protein of the synapse.	0.602
CHRNA1	ALG14	ENSFCAP00000054888	ENSFCAP00000052904	Acetylcholine receptor subunit alpha; After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.	ALG14 UDP-N-acetylglucosaminyltransferase subunit.	0.455
CHRNA1	CHRND	ENSFCAP00000054888	ENSFCAP00000005273	Acetylcholine receptor subunit alpha; After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.	Cholinergic receptor nicotinic delta subunit.	0.757
CHRNA1	CHRNE	ENSFCAP00000054888	ENSFCAP00000028802	Acetylcholine receptor subunit alpha; After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.	Cholinergic receptor nicotinic epsilon subunit.	0.777
CHRNA1	CHRNG	ENSFCAP00000054888	ENSFCAP00000038027	Acetylcholine receptor subunit alpha; After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.	Cholinergic receptor nicotinic gamma subunit.	0.740
CHRNA1	DOK7	ENSFCAP00000054888	ENSFCAP00000053252	Acetylcholine receptor subunit alpha; After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.	Docking protein 7.	0.526
CHRNA1	GMPPB	ENSFCAP00000054888	ENSFCAP00000009914	Acetylcholine receptor subunit alpha; After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.	GDP-mannose pyrophosphorylase B.	0.522
CHRNA1	MUSK	ENSFCAP00000054888	ENSFCAP00000050915	Acetylcholine receptor subunit alpha; After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.	Muscle associated receptor tyrosine kinase.	0.543
CHRNA1	MYO9A	ENSFCAP00000054888	ENSFCAP00000024834	Acetylcholine receptor subunit alpha; After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.	Myosin IXA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.455
CHRNA1	RAPSN	ENSFCAP00000054888	ENSFCAP00000002333	Acetylcholine receptor subunit alpha; After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.	Receptor associated protein of the synapse.	0.585
CHRND	ALG14	ENSFCAP00000005273	ENSFCAP00000052904	Cholinergic receptor nicotinic delta subunit.	ALG14 UDP-N-acetylglucosaminyltransferase subunit.	0.715
CHRND	CHRNA1	ENSFCAP00000005273	ENSFCAP00000054888	Cholinergic receptor nicotinic delta subunit.	Acetylcholine receptor subunit alpha; After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.	0.757