STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTRAFUncharacterized protein. (244 aa)    
Predicted Functional Partners:
DDX1
DEAD-box helicase 1.
   
 0.964
FAM98A
Family with sequence similarity 98 member A.
    
 0.958
FAM98B
Family with sequence similarity 98 member B.
    
 0.954
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
   
 0.945
CA3H2orf49
Chromosome A3 C2orf49 homolog.
    
 0.904
FAM98C
Family with sequence similarity 98 member C.
    
 0.853
SLFNL1
Schlafen like 1.
   
 0.839
ZBTB8OS
Zinc finger and BTB domain containing 8 opposite strand.
     
 0.744
LSM12
LSM12 homolog.
    
 
 0.715
HNRNPDL
Heterogeneous nuclear ribonucleoprotein D like.
   
  
 0.694
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.