STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS13DVacuolar protein sorting 13 homolog D. (4389 aa)    
Predicted Functional Partners:
KIAA2013
KIAA2013.
      
 0.788
MIGA2
Mitoguardin 2.
      
 0.637
ARHGAP27
Rho GTPase activating protein 27.
      
 0.629
ENSFCAP00000046287
RRM domain-containing protein.
      
 0.629
ATG2B
Autophagy related 2B.
   
  
 0.626
LOC101091046
Uncharacterized protein.
      
 0.602
EHBP1L1
EH domain binding protein 1 like 1.
      
 0.558
RSU1
Ras suppressor protein 1.
      
 0.554
SHQ1
SHQ1, H/ACA ribonucleoprotein assembly factor.
      
 0.551
KMT2A
Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.
  
  
 0.538
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.