STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRNP40Small nuclear ribonucleoprotein U5 subunit 40. (358 aa)    
Predicted Functional Partners:
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.998
PRPF8
Pre-mRNA processing factor 8.
   
 0.998
PRPF6
Pre-mRNA processing factor 6.
   
 0.998
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.995
DDX23
DEAD-box helicase 23.
    
 0.991
TXNL4A
Thioredoxin like 4A.
    
 0.991
SNRPE
Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development.
   
 0.988
BUD31
BUD31 homolog.
   
 0.984
PRPF19
Pre-mRNA processing factor 19.
   
0.973
CDC5L
Cell division cycle 5 like.
   
 0.971
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.