STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF18SFM domain-containing protein. (359 aa)    
Predicted Functional Partners:
SLU7
SLU7 homolog, splicing factor.
  
 0.987
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 0.981
CDC5L
Cell division cycle 5 like.
   
 
 0.971
BUD31
BUD31 homolog.
    
 
 0.964
PRPF8
Pre-mRNA processing factor 8.
    
 0.950
CDC40
Cell division cycle 40.
   
 0.935
CWC22
CWC22 spliceosome associated protein homolog.
   
 0.921
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
     
 0.879
DHX38
DEAH-box helicase 38.
   
 0.876
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.873
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.