STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CD4H9orf78Chromosome D4 C9orf78 homolog. (289 aa)    
Predicted Functional Partners:
MED22
Mediator complex subunit 22.
   
  
 0.865
SLU7
SLU7 homolog, splicing factor.
   
 
 0.854
PRPF8
Pre-mRNA processing factor 8.
    
 
 0.845
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 
 0.841
PRPF38A
Pre-mRNA processing factor 38A.
   
  
 0.717
NKAP
NFKB activating protein.
   
 
  0.679
NKAPL
NFKB activating protein like.
   
 
  0.679
CWC22
CWC22 spliceosome associated protein homolog.
    
 0.655
DHX35
DEAH-box helicase 35.
   
 0.635
VPS37D
VPS37D subunit of ESCRT-I.
      
 0.627
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.