STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM47Tripartite motif containing 47. (632 aa)    
Predicted Functional Partners:
TRIM42
Tripartite motif containing 42.
      
 0.770
SKA2
Tripartite motif containing 37.
    
 
 0.750
TRIM59
Uncharacterized protein.
      
 0.745
TRIM69
Tripartite motif containing 69.
      
 0.739
TRIM66
Tripartite motif containing 66.
      
 0.716
TRIM23
Tripartite motif containing 23.
    
 0.689
TRIM54
Tripartite motif containing 54.
      
 0.675
DDX58
DExD/H-box helicase 58.
   
 0.659
UBE2L6
Ubiquitin conjugating enzyme E2 L6; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.571
IFIH1
Interferon induced with helicase C domain 1.
   
 0.560
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.