STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNDIG1LSynapse differentiation inducing 1 like. (239 aa)    
Predicted Functional Partners:
TMEM108
Transmembrane protein 108.
      
 0.716
VRTN
Vertebrae development associated.
   
  
 0.679
LARP1B
La ribonucleoprotein domain family member 1B.
      
 0.661
LRRC10B
Leucine rich repeat containing 10B.
   
  
 0.627
PROX2
Prospero homeobox 2.
      
 0.608
ZNF432
Zinc finger protein 432.
      
 0.605
RIPPLY2
Ripply transcriptional repressor 2.
      
 0.604
AREL1
Apoptosis resistant E3 ubiquitin protein ligase 1.
      
 0.603
ANKRD13B
Ankyrin repeat domain 13B.
      
 0.590
CACNA1F
Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.
   
  
 0.572
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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