STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRRTSerrate, RNA effector molecule. (876 aa)    
Predicted Functional Partners:
ENSFCAP00000058905
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 0.986
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.979
ALYREF
Aly/REF export factor.
   
 0.974
PHAX
Phosphorylated adaptor for RNA export.
   
 0.969
PRPF38A
Pre-mRNA processing factor 38A.
     
 0.966
MTREX
Mtr4 exosome RNA helicase.
   
 0.961
SRRM2
Serine/arginine repetitive matrix 2.
   
 
 0.956
ZMAT2
Zinc finger matrin-type 2.
     
 0.949
DHX9
DExH-box helicase 9.
   
 0.939
PRPF6
Pre-mRNA processing factor 6.
   
 
 0.936
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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