| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ACAP3 | AGFG2 | ENSFCAP00000007052 | ENSFCAP00000055311 | ArfGAP with coiled-coil, ankyrin repeat and PH domains 3. | ArfGAP with FG repeats 2. | 0.624 |
| ACAP3 | APPL1 | ENSFCAP00000007052 | ENSFCAP00000033650 | ArfGAP with coiled-coil, ankyrin repeat and PH domains 3. | Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1. | 0.579 |
| ACAP3 | APPL2 | ENSFCAP00000007052 | ENSFCAP00000001356 | ArfGAP with coiled-coil, ankyrin repeat and PH domains 3. | Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2. | 0.579 |
| ACAP3 | ATP6V1F | ENSFCAP00000007052 | ENSFCAP00000048182 | ArfGAP with coiled-coil, ankyrin repeat and PH domains 3. | V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. | 0.483 |
| ACAP3 | NEMF | ENSFCAP00000007052 | ENSFCAP00000015881 | ArfGAP with coiled-coil, ankyrin repeat and PH domains 3. | Nuclear export mediator factor. | 0.527 |
| ACAP3 | RAB35 | ENSFCAP00000007052 | ENSFCAP00000054368 | ArfGAP with coiled-coil, ankyrin repeat and PH domains 3. | Uncharacterized protein. | 0.663 |
| ACAP3 | SCNN1D | ENSFCAP00000007052 | ENSFCAP00000007050 | ArfGAP with coiled-coil, ankyrin repeat and PH domains 3. | Uncharacterized protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family. | 0.672 |
| ACAP3 | UBE2J2 | ENSFCAP00000007052 | ENSFCAP00000051352 | ArfGAP with coiled-coil, ankyrin repeat and PH domains 3. | UBIQUITIN_CONJUGAT_2 domain-containing protein. | 0.697 |
| ACAP3 | VPS37D | ENSFCAP00000007052 | ENSFCAP00000046095 | ArfGAP with coiled-coil, ankyrin repeat and PH domains 3. | VPS37D subunit of ESCRT-I. | 0.455 |
| ACAP3 | ZNF410 | ENSFCAP00000007052 | ENSFCAP00000048535 | ArfGAP with coiled-coil, ankyrin repeat and PH domains 3. | Zinc finger protein 410. | 0.599 |
| AGFG2 | ACAP3 | ENSFCAP00000055311 | ENSFCAP00000007052 | ArfGAP with FG repeats 2. | ArfGAP with coiled-coil, ankyrin repeat and PH domains 3. | 0.624 |
| APPL1 | ACAP3 | ENSFCAP00000033650 | ENSFCAP00000007052 | Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1. | ArfGAP with coiled-coil, ankyrin repeat and PH domains 3. | 0.579 |
| APPL1 | APPL2 | ENSFCAP00000033650 | ENSFCAP00000001356 | Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1. | Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2. | 0.989 |
| APPL1 | RAB35 | ENSFCAP00000033650 | ENSFCAP00000054368 | Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1. | Uncharacterized protein. | 0.478 |
| APPL2 | ACAP3 | ENSFCAP00000001356 | ENSFCAP00000007052 | Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2. | ArfGAP with coiled-coil, ankyrin repeat and PH domains 3. | 0.579 |
| APPL2 | APPL1 | ENSFCAP00000001356 | ENSFCAP00000033650 | Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2. | Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1. | 0.989 |
| APPL2 | RAB35 | ENSFCAP00000001356 | ENSFCAP00000054368 | Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2. | Uncharacterized protein. | 0.478 |
| ATP6V1F | ACAP3 | ENSFCAP00000048182 | ENSFCAP00000007052 | V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. | ArfGAP with coiled-coil, ankyrin repeat and PH domains 3. | 0.483 |
| ATP6V1F | ZNF410 | ENSFCAP00000048182 | ENSFCAP00000048535 | V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. | Zinc finger protein 410. | 0.537 |
| NEMF | ACAP3 | ENSFCAP00000015881 | ENSFCAP00000007052 | Nuclear export mediator factor. | ArfGAP with coiled-coil, ankyrin repeat and PH domains 3. | 0.527 |