STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEPDPeptidase D. (493 aa)    
Predicted Functional Partners:
RIMKLB
Ribosomal modification protein rimK like family member B.
      
 0.727
PGD
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
   
  
 0.659
PNP
Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
  
  
 0.589
TPI1
Triosephosphate isomerase.
  
 
 0.568
FH
Fumarate hydratase.
   
 
 0.556
MASP2
Mannan binding lectin serine peptidase 2; Belongs to the peptidase S1 family.
    
 0.556
DNPEP
Aspartyl aminopeptidase; Belongs to the peptidase M18 family.
   
 
 0.506
DOCK6
Dedicator of cytokinesis 6; Belongs to the DOCK family.
      
 0.499
CELF2
CUGBP Elav-like family member 2.
      
 0.487
NAALADL1
TFR_dimer domain-containing protein.
   
  
 0.475
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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