STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMOC1SPARC related modular calcium binding 1. (639 aa)    
Predicted Functional Partners:
SFMBT2
Scm like with four mbt domains 2.
      
 0.790
JADE1
Jade family PHD finger 1.
      
 0.760
CABP7
Calcium binding protein 7.
      
 0.758
SLC38A4
Solute carrier family 38 member 4.
      
 0.596
KDM6B
Lysine demethylase 6B.
   
  
 0.580
ABCB6
ATP binding cassette subfamily B member 6.
      
 0.529
PHLDA2
Pleckstrin homology like domain family A member 2.
      
 0.522
SALL2
Spalt like transcription factor 2.
      
 0.517
TSSC4
Tumor suppressing subtransferable candidate 4.
      
 0.512
GDF6
TGF_BETA_2 domain-containing protein.
      
 0.503
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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