STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS45Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family. (570 aa)    
Predicted Functional Partners:
RBSN
Rabenosyn, RAB effector.
    
 0.999
STX16
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 
 0.980
RAB5A
RAB5A, member RAS oncogene family.
 
  
 0.950
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
   
 
 0.904
ERGIC3
ERGIC and golgi 3.
 
      0.900
MTO1
Mitochondrial tRNA translation optimization 1.
 
      0.899
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.899
COG3
Component of oligomeric golgi complex 3.
     
 0.860
VPS18
VPS18 core subunit of CORVET and HOPS complexes.
    
 0.810
COG4
Component of oligomeric golgi complex 4.
   
 
 0.808
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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