Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF6Ring finger protein 6. (683 aa)    
Predicted Functional Partners:
RAP1GAP2
RAP1 GTPase activating protein 2.
      
 0.767
SMAD6
Mothers against decapentaplegic homolog.
   
 0.712
SMAD7
Mothers against decapentaplegic homolog.
   
 0.712
RYK
Receptor like tyrosine kinase.
      
 0.705
BDKRB2
Bradykinin receptor B2; Belongs to the G-protein coupled receptor 1 family.
      
 0.685
SEC63
SEC63 homolog, protein translocation regulator.
    
 
 0.675
UBA52
Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be in [...]
    
 0.632
UBE2N
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.579
ENSFCAP00000034079
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.579
ENSFCAP00000034335
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.579
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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