STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGM7Transglutaminase 7. (710 aa)    
Predicted Functional Partners:
LHFPL5
LHFPL tetraspan subfamily member 5.
   
  
 0.712
OXSR1
Oxidative stress responsive kinase 1.
   
  
 0.659
GJB6
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.553
GRAMD2A
GRAM domain containing 2A.
      
 0.521
F13B
Coagulation factor XIII B chain.
    
 0.518
OTX1
Orthodenticle homeobox 1.
      
 0.493
ALOX12
Arachidonate 12-lipoxygenase, 12S type.
   
  
 0.484
TECRL
Trans-2,3-enoyl-CoA reductase like.
      
 0.455
HOXA2
Homeobox A2.
    
 
 0.442
CFHR5
Complement factor H related 5.
    
 0.431
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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