RNASEH2B protein (Felis catus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RNASEH2B

Ribonuclease H2 subunit B. (302 aa)

Predicted Functional Partners:

RNASEH2A

0.999

RNASEH2C

0.997

PCNA

0.738

C16orf72

0.738

ZMYM5

0.716

ZMYM4

0.711

CTDP1

0.701

PGS1

0.673

BLM

0.671

RB1

0.658

Your Current Organism:

Felis catus

NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BLM	PCNA	ENSFCAP00000005659	ENSFCAP00000008406	BLM RecQ like helicase.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.769
BLM	RNASEH2A	ENSFCAP00000005659	ENSFCAP00000000439	BLM RecQ like helicase.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.710
BLM	RNASEH2B	ENSFCAP00000005659	ENSFCAP00000013229	BLM RecQ like helicase.	Ribonuclease H2 subunit B.	0.671
C16orf72	RNASEH2A	ENSFCAP00000051349	ENSFCAP00000000439	Chromosome 16 open reading frame 72.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.734
C16orf72	RNASEH2B	ENSFCAP00000051349	ENSFCAP00000013229	Chromosome 16 open reading frame 72.	Ribonuclease H2 subunit B.	0.738
C16orf72	RNASEH2C	ENSFCAP00000051349	ENSFCAP00000054145	Chromosome 16 open reading frame 72.	Ribonuclease H2 subunit C.	0.760
CTDP1	RB1	ENSFCAP00000000525	ENSFCAP00000024610	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	RB transcriptional corepressor 1.	0.406
CTDP1	RNASEH2A	ENSFCAP00000000525	ENSFCAP00000000439	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.679
CTDP1	RNASEH2B	ENSFCAP00000000525	ENSFCAP00000013229	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	Ribonuclease H2 subunit B.	0.701
CTDP1	RNASEH2C	ENSFCAP00000000525	ENSFCAP00000054145	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	Ribonuclease H2 subunit C.	0.741
PCNA	BLM	ENSFCAP00000008406	ENSFCAP00000005659	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	BLM RecQ like helicase.	0.769
PCNA	RNASEH2A	ENSFCAP00000008406	ENSFCAP00000000439	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.929
PCNA	RNASEH2B	ENSFCAP00000008406	ENSFCAP00000013229	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Ribonuclease H2 subunit B.	0.738
PGS1	RNASEH2B	ENSFCAP00000060814	ENSFCAP00000013229	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Functions in the biosynthesis of the anionic phospholipids phosphatidylglycerol and cardiolipin; Belongs to the CDP-alcohol phosphatidyltransferase class-II family.	Ribonuclease H2 subunit B.	0.673
RB1	CTDP1	ENSFCAP00000024610	ENSFCAP00000000525	RB transcriptional corepressor 1.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.406
RB1	RNASEH2A	ENSFCAP00000024610	ENSFCAP00000000439	RB transcriptional corepressor 1.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.696
RB1	RNASEH2B	ENSFCAP00000024610	ENSFCAP00000013229	RB transcriptional corepressor 1.	Ribonuclease H2 subunit B.	0.658
RNASEH2A	BLM	ENSFCAP00000000439	ENSFCAP00000005659	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	BLM RecQ like helicase.	0.710
RNASEH2A	C16orf72	ENSFCAP00000000439	ENSFCAP00000051349	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	Chromosome 16 open reading frame 72.	0.734
RNASEH2A	CTDP1	ENSFCAP00000000439	ENSFCAP00000000525	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.679