STMN4 protein (Felis catus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

STMN4

Stathmin 4. (216 aa)

Predicted Functional Partners:

TUBB4B

0.888

TUBB2A

0.888

TUBB4A

0.888

TTL

0.716

FAM160B2

0.674

TTLL1

0.638

ABLIM2

0.598

LOC101090556

0.590

TUBA1C

0.590

TUBA1A

0.590

Your Current Organism:

Felis catus

NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABLIM2	STMN4	ENSFCAP00000049996	ENSFCAP00000013372	Actin binding LIM protein family member 2.	Stathmin 4.	0.598
FAM160B2	STMN4	ENSFCAP00000054583	ENSFCAP00000013372	Family with sequence similarity 160 member B2.	Stathmin 4.	0.674
LOC101090556	STMN4	ENSFCAP00000003529	ENSFCAP00000013372	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Stathmin 4.	0.590
LOC101090556	TTL	ENSFCAP00000003529	ENSFCAP00000007498	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin tyrosine ligase.	0.521
LOC101090556	TUBB2A	ENSFCAP00000003529	ENSFCAP00000013569	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.809
LOC101090556	TUBB4A	ENSFCAP00000003529	ENSFCAP00000060344	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.806
LOC101090556	TUBB4B	ENSFCAP00000003529	ENSFCAP00000003502	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.928
STMN4	ABLIM2	ENSFCAP00000013372	ENSFCAP00000049996	Stathmin 4.	Actin binding LIM protein family member 2.	0.598
STMN4	FAM160B2	ENSFCAP00000013372	ENSFCAP00000054583	Stathmin 4.	Family with sequence similarity 160 member B2.	0.674
STMN4	LOC101090556	ENSFCAP00000013372	ENSFCAP00000003529	Stathmin 4.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.590
STMN4	TTL	ENSFCAP00000013372	ENSFCAP00000007498	Stathmin 4.	Tubulin tyrosine ligase.	0.716
STMN4	TTLL1	ENSFCAP00000013372	ENSFCAP00000011246	Stathmin 4.	Tubulin tyrosine ligase like 1.	0.638
STMN4	TUBA1A	ENSFCAP00000013372	ENSFCAP00000026344	Stathmin 4.	Tubulin alpha 1a; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.590
STMN4	TUBA1C	ENSFCAP00000013372	ENSFCAP00000011014	Stathmin 4.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.590
STMN4	TUBB2A	ENSFCAP00000013372	ENSFCAP00000013569	Stathmin 4.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.888
STMN4	TUBB4A	ENSFCAP00000013372	ENSFCAP00000060344	Stathmin 4.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.888
STMN4	TUBB4B	ENSFCAP00000013372	ENSFCAP00000003502	Stathmin 4.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.888
TTL	LOC101090556	ENSFCAP00000007498	ENSFCAP00000003529	Tubulin tyrosine ligase.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.521
TTL	STMN4	ENSFCAP00000007498	ENSFCAP00000013372	Tubulin tyrosine ligase.	Stathmin 4.	0.716
TTL	TUBA1A	ENSFCAP00000007498	ENSFCAP00000026344	Tubulin tyrosine ligase.	Tubulin alpha 1a; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.521