STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSX1Visual system homeobox 1. (364 aa)    
Predicted Functional Partners:
ATOH7
Atonal bHLH transcription factor 7.
   
  
 0.771
SCGN
Secretagogin, EF-hand calcium binding protein.
      
 0.730
IRX5
Iroquois homeobox 5.
   
 
 0.727
PRDM8
PR/SET domain 8.
   
  
 0.710
NSD1
Nuclear receptor binding SET domain protein 1.
   
  
 0.647
NYX
Nyctalopin.
      
 0.627
RCVRN
Recoverin.
   
  
 0.620
POU4F2
POU domain protein.
   
  
 0.569
PTF1A
Pancreas associated transcription factor 1a.
   
  
 0.549
GRM6
Glutamate metabotropic receptor 6.
   
  
 0.519
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.