STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UPF3AUPF3A regulator of nonsense mediated mRNA decay. (478 aa)    
Predicted Functional Partners:
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.997
UPF1
UPF1 RNA helicase and ATPase.
    
 0.997
SMG6
SMG6 nonsense mediated mRNA decay factor.
   
 0.995
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
 0.991
MAGOH
Mago homolog, exon junction complex subunit.
    
 0.986
SMG7
SMG7 nonsense mediated mRNA decay factor.
   
 0.982
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
  
  
0.975
LOC101093921
Uncharacterized protein.
    
 0.962
NXF1
Nuclear RNA export factor 1.
    
 0.962
LOC101092919
Uncharacterized protein.
    
 0.962
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.