STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL6A1Collagen type VI alpha 1 chain. (1027 aa)    
Predicted Functional Partners:
COL6A2
Collagen type VI alpha 2 chain.
  
0.994
COL1A1
Collagen type I alpha 1 chain.
  
0.945
LOC101093562
Uncharacterized protein.
     
 0.905
COL3A1
Collagen type III alpha 1 chain.
  
0.874
ITGA8
Integrin subunit alpha 8; Belongs to the integrin alpha chain family.
    
 0.842
ITGB5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.835
ITGA11
Integrin subunit alpha 11; Belongs to the integrin alpha chain family.
   
 
 0.816
ITGA1
Integrin subunit alpha 1; Belongs to the integrin alpha chain family.
   
 
 0.816
COL1A2
Collagen type I alpha 2 chain.
  
0.811
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
   
 0.802
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.