ERCC6 protein (Felis catus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ERCC6

ERCC excision repair 6, chromatin remodeling factor. (1484 aa)

Predicted Functional Partners:

ERCC8

0.989

CHRNB1

0.986

XPA

0.985

POLR2B

0.980

POLR2I

0.978

DDB1

0.958

POLR2D

0.954

POLR2G

0.939

POLR2F

0.939

TCEA1

0.939

Your Current Organism:

Felis catus

NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHRNB1	DDB1	ENSFCAP00000038908	ENSFCAP00000024813	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Damage specific DNA binding protein 1.	0.855
CHRNB1	ERCC6	ENSFCAP00000038908	ENSFCAP00000024970	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the ligand-gated ion channel (TC 1.A.9) family.	ERCC excision repair 6, chromatin remodeling factor.	0.986
CHRNB1	ERCC8	ENSFCAP00000038908	ENSFCAP00000054354	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the ligand-gated ion channel (TC 1.A.9) family.	ERCC excision repair 8, CSA ubiquitin ligase complex subunit.	0.922
CHRNB1	POLR2B	ENSFCAP00000038908	ENSFCAP00000049513	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the ligand-gated ion channel (TC 1.A.9) family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
CHRNB1	POLR2D	ENSFCAP00000038908	ENSFCAP00000018103	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the ligand-gated ion channel (TC 1.A.9) family.	RNA polymerase II subunit D.	0.998
CHRNB1	POLR2F	ENSFCAP00000038908	ENSFCAP00000047444	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the ligand-gated ion channel (TC 1.A.9) family.	RNA polymerase II subunit F.	0.998
CHRNB1	POLR2G	ENSFCAP00000038908	ENSFCAP00000022409	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the ligand-gated ion channel (TC 1.A.9) family.	RNA polymerase II subunit G.	0.998
CHRNB1	POLR2I	ENSFCAP00000038908	ENSFCAP00000022952	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the ligand-gated ion channel (TC 1.A.9) family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.998
CHRNB1	TCEA1	ENSFCAP00000038908	ENSFCAP00000050186	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein.	0.925
DDB1	CHRNB1	ENSFCAP00000024813	ENSFCAP00000038908	Damage specific DNA binding protein 1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.855
DDB1	ERCC6	ENSFCAP00000024813	ENSFCAP00000024970	Damage specific DNA binding protein 1.	ERCC excision repair 6, chromatin remodeling factor.	0.958
DDB1	ERCC8	ENSFCAP00000024813	ENSFCAP00000054354	Damage specific DNA binding protein 1.	ERCC excision repair 8, CSA ubiquitin ligase complex subunit.	0.998
DDB1	POLR2B	ENSFCAP00000024813	ENSFCAP00000049513	Damage specific DNA binding protein 1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.878
DDB1	POLR2D	ENSFCAP00000024813	ENSFCAP00000018103	Damage specific DNA binding protein 1.	RNA polymerase II subunit D.	0.823
DDB1	POLR2F	ENSFCAP00000024813	ENSFCAP00000047444	Damage specific DNA binding protein 1.	RNA polymerase II subunit F.	0.823
DDB1	POLR2G	ENSFCAP00000024813	ENSFCAP00000022409	Damage specific DNA binding protein 1.	RNA polymerase II subunit G.	0.820
DDB1	POLR2I	ENSFCAP00000024813	ENSFCAP00000022952	Damage specific DNA binding protein 1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.828
DDB1	TCEA1	ENSFCAP00000024813	ENSFCAP00000050186	Damage specific DNA binding protein 1.	Uncharacterized protein.	0.582
DDB1	XPA	ENSFCAP00000024813	ENSFCAP00000055267	Damage specific DNA binding protein 1.	XPA, DNA damage recognition and repair factor.	0.848
ERCC6	CHRNB1	ENSFCAP00000024970	ENSFCAP00000038908	ERCC excision repair 6, chromatin remodeling factor.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.986