STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM13Tripartite motif containing 13. (409 aa)    
Predicted Functional Partners:
SPRYD7
SPRY domain containing 7.
   
 
 0.763
ALPK1
Alpha kinase 1.
      
 0.676
LRSAM1
Leucine rich repeat and sterile alpha motif containing 1.
    
 
 0.645
SGCZ
Sarcoglycan zeta.
      
 0.637
XPNPEP3
X-prolyl aminopeptidase 3.
      
 0.618
RNF166
Ring finger protein 166.
      
 0.618
NFX1
Nuclear transcription factor, X-box binding 1.
    
 
 0.602
TRIM44
Tripartite motif containing 44.
    
 
 0.568
SKA2
Tripartite motif containing 37.
    
 
 0.533
CITED4
Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4.
      
 0.526
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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