STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRBV12-5T cell receptor beta variable 12-5. (120 aa)    
Predicted Functional Partners:
LOC101097801
Ig-like domain-containing protein.
      
 0.655
ENSFCAP00000054252
Ig-like domain-containing protein.
  
 
  0.558
TRAV17
T cell receptor alpha variable 17.
  
   
 0.538
ENSFCAP00000058626
Ig-like domain-containing protein.
  
 
  0.536
TRAV29DV5
T cell receptor alpha variable 29/delta variable 5 (gene/pseudogene).
  
 
  0.525
ENSFCAP00000031876
Ig-like domain-containing protein.
  
 
  0.524
ENSFCAP00000055620
Uncharacterized protein.
  
 
  0.506
PRSS58
Serine protease 58; Belongs to the peptidase S1 family.
    
 0.504
LOC101084304
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.504
ENSFCAP00000052666
Uncharacterized protein.
  
 
  0.503
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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