STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRFN5Leucine rich repeat and fibronectin type III domain containing 5. (775 aa)    
Predicted Functional Partners:
PTPRD
Protein tyrosine phosphatase receptor type D.
    
0.985
MDGA2
MAM domain containing glycosylphosphatidylinositol anchor 2.
   
 0.783
RABEPK
Rab9 effector protein with kelch motifs.
      
 0.750
TRAPPC6B
Trafficking protein particle complex 6B.
   
  
 0.726
TANC2
Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2.
   
 0.679
IL1RAPL1
Interleukin 1 receptor accessory protein like 1.
   
 0.674
MDGA1
MAM domain containing glycosylphosphatidylinositol anchor 1.
   
 0.672
PTPRS
Protein tyrosine phosphatase receptor type S.
    
 0.649
PTPRF
Protein tyrosine phosphatase receptor type F.
    
 0.649
PNN
Uncharacterized protein.
      
 0.590
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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